PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00031.20
Common NameJCGZ_02710, LOC105632616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 267aa    MW: 30350.7 Da    PI: 5.2409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00031.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183685255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Jcr4S00031.20 36 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 85
                   799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-193693IPR016177DNA-binding domain
PfamPF008475.1E-133685IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-283693IPR001471AP2/ERF domain
SMARTSM003801.4E-353699IPR001471AP2/ERF domain
CDDcd000182.83E-323692No hitNo description
PRINTSPR003678.9E-83748IPR001471AP2/ERF domain
PRINTSPR003678.9E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEIQFQQQKQ HKSSSVPVNK TSKFKGRHRP NNNNNKFVGV RQRPSGRWVA EIKDTTQKIR  60
MWLGTFETAE EAARAYDEAA CLLRGSNTRT NFITQVSLDS PLASRIRNLL KNKKAGKKQQ  120
REEENLEVST PSNSTVTTST CTSSSSSSSI DNSTPSGEIV NDTQFFDDVY KPDMSNCREE  180
FELGPFQSDL SWGFGSGLDR FSFTQEVLDF PRNMLLPETS DLEFTEFDRM KVERQISASL  240
YAMNGVQEYM ETVHDPTEAL WDLPPIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142597267ATERF1
3gcc_A3e-142597267ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070434.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A067L5C60.0A0A067L5C6_JATCU; Uncharacterized protein
STRINGPOPTR_0013s05330.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-29related to AP2 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]